“The Czech Republic is a global example for microclimate science”

The soil sensor, the smart sensor that measures heat and drought in 5,000 gardens, parks, nature reserves and fields, was developed by TOMST. A small Czech company, world famous among microclimate scientists and, thanks to the citizen science project CurieuzeNeuzen in de Tuin, also in Flanders, Belgium. 

The CurieuzeNeuzen soil sensor is based on the existing TMS-4 sensor from TOMST (you can read all about that sensor in this scientific publication). The big – and only – difference is that the CurieuzeNeuzen “lawn dagger”, as it is affectionally called, is connected to the Internet of Things via Orange’s narrowband 4G network. With the old TMS-4 sensor, researchers retrieve the data manually with a cable. 

We spoke to Tomas (founder of TOMST) and Lucie Haase about the sensor and their company. Jonas Lembrechts, microclimate expert, TMS-fan and scientifically responsible for CurieuzeNeuzen, joined us at the table. 
 

How did TOMST come about? 

Tomas: TOMST started about 26 years ago, after I left PC Magazine and focused on iButtons. iButtons are small sensors used in badges to open doors. Our first product, the PES, was a small sensor that monitored security guards to see if they were doing their job properly. These sensors had to be extremely robust, since at that time there was a lot of abuse: security guards would destroy the sensor so that their employer would not realise that they were just sitting on their backs. 

Precisely because these sensors are so indestructible, my wife’s colleagues, who work for the Czech Academy of Science, became interested in the devices. They were looking for a sensor to measure temperature in natural areas. That’s where the idea came from, together with colleagues from the Department of GIS and Remote Sensing from the Czech Botanical Institute, for the TMS: an indestructible sensor that could withstand extreme temperature fluctuations, with thermometers at three points. 

So the reason TOMST ended up in climate science was rather accidental? 

TOMST: Indeed, it was more of a side project for us. At the time, 2008, we had a big project going in the UK with a big supermarket chain. That project was very profitable but also very stressful. The soil sensor was more of a hobby. At the time, we only asked our university colleagues to reimburse us for the cost of parts. 
 

Was there also commercial interest in your climate sensors from the outset, or was it mainly from non-profits and universities? 

TOMST: Most of our customers are universities and scientists. For scientists, a sensor that always measures in the same way is ideal. That way, scientists can always replicate their experiments. Also, it is usually less of a problem for scientists if they have to wait a few months before they can retrieve their data. 

Commercial organisations often see things differently. In Dubai, for example, they would be very interested in sensors that would tell them remotely that the soil is dry and the newly planted palm trees need water. Our current sensors can’t do that yet. 
 

The TMS-NB, the IoT-connected version of the TMS4 gets installed in a Flemish lawn

So before CurieuzeNeuzen contacted you, you were already playing with the idea of making the soil sensor wireless? 

TOMST: That’s right! We investigated the possibilities, but ran into a major problem. Our TMS sensors can last for years on one battery and we absolutely want to keep this strong point. This is not possible with, for example, Bluetooth, because it wouldn’t work at as much of a distance as necessary here. 

Wireless micro-climate sensors only recently became possible with the development of the narrowband 4G network? 

TOMST: Narrowband was indeed one of the first solutions to connect our sensors wirelessly. The advantage of 4G is that it is an existing network, so there are already transmitters everywhere and you never have to send data too far. The infrastructure is there; you don’t have to build a new network. 

Narrowband 4G uses very little energy and yet can process more data than, for example, SIG Fox, which we were also thinking about earlier (SIG Fox is another network technology for IoT, ed.). With narrowband, we can guarantee that one soil sensor can send data every day for eight years on one battery charge. 

You are a relatively small company, what was the first reaction when CurieuzeNeuzen contacted you with the request to develop and produce 5,000 4G sensors? 

TOMST: It was a very intense period. Connecting TMS to the Internet of Things would have happened anyway, only CurieuzeNeuzen accelerated the process enormously. At the beginning we were quite stunned by the request, producing 5,000 ordinary TMS-4 sensors is quite a challenge in itself, let alone developing a whole new 4G model. 

Because the corona crisis had us worried about the future of our business, we took up the challenge anyway. The chips of our sensors are entirely made in the Czech Republic. Our partner can only produce a certain number per week. So we knew that it was going to be a very tight deadline to get everything done in time. Despite COVID, it was a very busy year! 

What was Orange’s role in the development of the 4G radar band? 

TOMST: Orange provides the network to which the sensors are connected in Flanders. Their role was therefore essential. Corona provided an additional difficulty in developing a soil sensor connected to narrowband 4G. We were not allowed to leave the country, so we could not go and test it ourselves in Belgium. We hope that when the vaccination campaign gets underway, we will soon be able to come to Belgium for further testing. 

Jonas, you are scientifically responsible for CurieuzeNeuzen, what do you think the development of the TOMST soil sensors means for microclimate science? 

Jonas Lembrechts: The development of the TMS-4 by TOMST and the colleagues from the Czech Institute of Botany has meant a lot for the maturing of microclimate science as a scientific discipline. Before this, every researcher used a different sensor. Since TOMST introduced the TMS-4 to the scientific community, it is much easier to compare each other’s measurements. The low price also allows us to work on a larger scale much more quickly. 

A global microclimate network, parallel to existing weather station networks, is coming ever closer thanks to the TMS-4. Real-time data will accelerate this even further, because it will also interest commercial players. The Czech Republic is a global model for microclimate science. The Czech Republic was I think the first to have such a network covering the entire country. It would be fantastic to be able to apply this approach elsewhere across the globe. 
 

The TMS-NB provided us with quasi-real time data on the effect of the stationary storm of July 14th and 15th on soil moisture in Flemish gardens. Shown here: the absolute increase in soil moisture percentage added up to around 20% in the eastern part of the country, where the ‘water bomb’ hit hardest.

Partly due to our partnership with De Standaard, CurieuzeNeuzen gets a lot of press attention in Belgium. Was this also picked up in the Czech Republic and did you also get recognition in your own country? 

TOMST: Not at all actually, or we didn’t notice it because we were so busy (laughs). Because we mainly supply to universities and scientists, we don’t really need it. Scientists publish papers about their research with our sensors, so we have a certain notoriety within the scientific community. We can only be grateful for that. 

We are often asked if the ‘4G lawn dagger’ will become commercially available. 

Jonas Lembrechts: After completion of the research, we are going to work with iFlux (a spin-off of the University of Antwerp and VITO, ed.) to see how we can commercially deploy the soil sensors that remain. In the first instance, we are aiming at farmers, horticulturists and city councils. 

TOMST: We plan to bring the 4G sensor to the market, but the biggest problem is the network. At the moment, there is no roaming specifically for narrowband, i.e. we have to find a different provider for each market in Europe or elsewhere in the world and install different SIM cards in the sensors. We are still investigating how we can tackle this problem. We are currently thinking about virtual operators. The 5G network is gradually being rolled out, which also creates new opportunities for us. 

Due to a global chip shortage, we currently have to wait a long time for the IoT modems of our sensors. Ideally, we will bring a narrowband sensor to market in the spring of 2022. 

More information on CurieuzeNeuzen in de Tuin: curieuzeneuzen.be 

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A railroad in Kashmir Himalaya

Kashmir Himalaya. A region famous for its breathtaking heights and steep mountain regions. From 1994 to 2013, the Indian government here worked on one of the most challenging railway lines of the world, facing major earthquake zones, extreme temperatures and inhospitable terrain, and including India’s highest railway bridge.

That’s the setting of our latest paper: we surveyed native and non-native plant vegetation along the whole stretch of the railroad to monitor its effects on plant species distributions.

Railway of Kashmir Himalaya : (a) map of the railway, with marked localities of the sampling sites,
(b) a view of a railway station, (c) a sampling site between stations illustrating
the sampling design

Both in 2014 and 2017, we (and with ‘we’, I mean Irfan Rashid and his team in Kashmir, as I was safely at home in charge of statistical analyses) collected vegetation data along T-shaped transects, adopting the common MIREN (Mountain Invasion Research Network, www.mountaininvasions.org) road survey design that might be familiar to many following this blog.

So what did we find? Plant communities changed significantly between 2014 and 2017, driven by declines in both native and non-native species richness, and increasing abundance of a few non-native species, especially in areas away from the railway track.

That both native and non-native richness would decline was unexpected, yet these patterns seem to suggest an advancing succession, where initially – rare – pioneer species are replaced by increasingly dominant and often non-native competitors. Additionally, it could suggest a trend towards delayed local extinctions after the disturbance resulting from building the railway.

Arundo.donax2web.jpg
Arundo donax, or giant reed, one of the non-native species expanding most rapidly in the region.
Picture by Forest and Kim Starr – [1], Public Domain, https://commons.wikimedia.org/w/index.php?curid=21416505

What is clear is that the plant communities next to railways do not reach equilibrium quickly after a disturbance. More than ten years after railway establishment, succession continued, and signs point towards a landscape increasingly dominated by non-native species. Our study indicates that the single disturbance event associated with constructing a railway in this Himalayan region had large and long-lasting effects on plant communities at and around this transport corridor.

Importantly, the one railway in the Kashmir valley is currently still disconnected from the national railroad system, with plans under way to finish that connection in the near future. As has been shown elsewhere, such a connection with the rest of the country would further play into the cards of non-native species. We thus highlight the need for a long-term region-wide coordinated monitoring and management program to limit further spread of such non-natives, and make specific recommendations of what is needed to manage the vegetation at and around the railway through Kashmir valley, especially with the planned connection of the railway with the rest of the countries railroad network in mind.

Conium maculatum
Conium maculatum, another rapidly expanding non-native in the region.
Picture by Djtanng – Own work, CC BY-SA 4.0, https://commons.wikimedia.org/w/index.php?curid=49059037

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The fingerprint of last weeks’ heavy precipitation on soil moisture in Flemish gardens

Last week, the southeast of Belgium had to cope with extreme precipitation, resulting in hallucinatory images of floodings. These large amounts of precipitation also leave clear traces in the soil moisture measurements of the CurieuzeNeuzen microclimate network.

As you can see on the map below, gardens in the province of Limburg, Antwerp and Flemish Brabant show an absolute peak in soil moisture of up to more than 20% in some places compared to the reference level last weekend.

Difference in soil moisture in Flemish lawns between the peak level on July 15 (after the days of heavy precipitation in the center and east of the country) and the average soil moisture on July 11, as a reference.

Lawns as sponges

Such soil moisture peaks clearly demonstrate the importance of our lawns, gardens and nature as a sponge during heavy rains: all the water that can be absorbed by our garden soils is at least temporarily trapped, and lowers the pressure on our sewers and rivers, thus reducing the risk of flooding. The observed increases in soil moisture even occurred in garden soils that were already very wet, after a very wet first half of July (the average soil moisture percentage on July 11 in Flemish lawns was 38%).

However, at times of extreme precipitation such as this, much of the precipitation does not get absorbed into the soil: there is a maximum amount of precipitation that soils can take at one time before they are completely saturated. The excess water will have to run off above ground, causing flooding. That maximum depends among others on soil type, precipitation history (very wet, but also very dry soils can absorb less water) and soil health (soils with a high diversity of soil life can absorb more water). If a large part of the soil is also covered with concrete or asphalt, the capacity of the soil as a water buffer rapidly decreases. The result: more flooding.

Also, the data from the lawn clouds clearly show the consequences of the long duration of this unusually stationary rainstorm. On 14/7, when the heavy rainfall in Flanders was still concentrated in the east of the region, the increases in soil moisture in the lawns of the CuriousNeuzen network in Limburg were still limited to 10 to 15%.

Difference in soil moisture in Flemish lawns between the peak level on July 14 (after the day with heavy precipitation only in the eastern part of the country) and the average soil moisture on July 11, as a reference.

More extreme weather

We also expect more of these extreme precipitation events in the future. Even if the total amount of precipitation in Belgium remains the same, it will be more difficult for plants to get water if that precipitation falls in fewer, but larger showers, just because the soil becomes saturated and has to lose much more water.

This summer, unlike previous years so far, Flanders was on the ‘wet side’ of persistent weather events in Europe, resulting in a lot of precipitation. This precipitation did allow the soil water stocks to fill up again. Such a wet start also reduces the chance of heat waves in our gardens: the summer sun will need a lot of energy to evaporate all that water, leaving less energy for heating up. A wet soil as we have now is the best air conditioner against heatwaves one can have. With the data from this summer, CurieuzeNeuzen will dive deeper into the role of this soil moisture in keeping our gardens cool.

The patterns on the maps above also clearly show that there can be large regional and local differences in the impact of precipitation on soil moisture. Our scientists will analyze these patterns to see if and how much garden location and management can affect the impact of precipitation on soil moisture, and how much we ourselves can manipulate the infiltration potential of our gardens.

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Even exotics plants prefer the shade during a heat wave

A warmer climate of origin does not necessarily protect exotic plants from heatwaves like our country has experienced in recent summers, we showed in a recent paper by Charly Géron, PhD candidate in our group. What does? Local microclimates!

Our cities have an increasingly rich diversity of alien plant species. In particular, species from native regions with warmer climates tend to thrive in the city, where they can benefit from the so-called “urban heat island effect”, in which our cities start to be several degrees warmer than the surrounding countryside. A recent study by the university of Ghent and the royal meteorological institute of Belgium (Steven Caluwaerts and colleagues) has shown that the temperature difference between city centre and rural country side added up to as much as 6 °C during the heatwave of summer 2019.

“We already knew that exotics from warmer regions prefer our cities because of that warmer climate,” Charly Géron, lead author of the study, explains. “The question remained whether these species would also cope better with heat waves in urban settings in summer, as we knew that the impact of heat waves in the city can be much harder.”

Measuring plant stress on a non-native Artemisia verlotiorum

So now it turns out that those warm-adapted species don’t necessarily have an edge in the city during a heat wave: they too see their stress levels go up. At least, if they are in full sunlight. Both species of warm and cold origin responded mainly to local shade effects: growing in the shade no matter if it is due to trees or buildings, allowed them to keep their stress levels under control. However, in unshaded city or countryside open spaces, their stress levels increased.

image
Anthocyanin levels (a measure of plant stress) going up in all studied Asteraceae with increasing openness of their growing location (SVF = Sky View Factor, a measure of how much sky they can see).

“These findings tell us that the effects of urban heat islands on plants are not as straightforward as thought,” explains Géron. “Although those warm species probably benefit from the warmer winter temperatures in the city (you also have much less ice-scratching to do if your car is parked in the city than in the countryside, because the heat island effect protects against freezing temperatures) or also the longer growing season (earlier and later favourable periods in cities with milder temperatures), for those extreme temperatures during a heat wave, it is mainly the local shade effect that counts.”


Similar patterns also show up in the dataset of the citizen science project “CuriousNoses in the Garden”, says Jonas Lembrechts, scientist in the latter project. “We see clearly that local factors such as shading by trees or buildings can do wonders for maximum temperatures in our city soils, a cooling effect from which those plants can also benefit. At night or in winter, those local effects play much less of a role: the city as a whole heats up due to the release of heat by the urban structures, whether or not there is a lot of shade nearby.” This contrast between local shading effects during the day and urban heat islands at night that CuriousNoses’ citizen scientists observe now appears to have an impact on the success of non-native plants as well.

Difference in temperature between day (left) and night (right) across Flanders, with the heat island effect popping up at night only. Interactive figure made by De Standaard, accessible here.
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Non-natives at the end of the world

The Crozet archipelago. A few tiny specks in a vast ocean, ‘on the road’ from South Africa to Antarctica. A tough climate, inhabitants limited to a bunch of winter-hardy researchers and the occasional seabird. But also: Poa annua, the common street grass you’d find in cracks in the streets in any European city.

The non-native Poa annua weathering the elements on Possession Island on the Crozet archipelago. Picture by Rémi Joly.

A species perhaps a bit out of place on the island, but it’s far from alone: there are already 68 non-native plant species recorded on Possession Island alone. Some of them very local, restricted to the few human settlements and the trails connecting them, while others have managed to spread quite a lot throughout the island.

That brought us to an important question: what is driving the distribution of these non-native species on the island? Is it climate that limits them, or human-related factors? Luckily, those scientists on the island haven’t been idle: they collected highly detailed survey data on non-native plant species distributions on the island yearly since 2010, making the archipelago and its vegetation into a perfect case study for cold-climate plant invasions. We used that dataset and went ahead to make species distribution models for each of the 6 most important non-natives. The results of this modelling exercise are now published here.

Interestingly, we observed two very distinct invasion patterns: species were either predicted to occur over a narrow spatial extent, with their occurrence probability strongly affected by human-related variables; or they occurred over a wide spatial extent, only limited by particularly harsh climatic conditions (see figure).

Graphical summary of the main findings of the paper, distinguishing between the two types of non-natives: left, low-spread species, mostly tall annuals, who are limited to human settlements and trails. Right, high-spread species, typically short-statured perennials, who have spread beyond the limits of human settlements and now are largely restricted by climate conditions-only.

So some species were highly climate-limited, while others were mostly driven by disturbance. Although the sample size was small, our species suggested that it were mostly perennial and low-stature species, historically introduced earlier, who appeared less dependent on human-induced dispersal and disturbance, and thus more widely distributed on the island.

Tall annual non-natives thus seem to lack the necessary toolkit to successfully spread far from introduction sites under the harsh sub-Antarctic climate on the island. Additionally, the coldest inner parts of the island are currently still free even from those widely-spread short perennials, suggesting that at least some parts of the island are still highly resistant against plant invasions.

So what to do next? Our study clearly exemplifies that even those harsh and remote places are not spared from non-native plants, and that with the right traits, non-natives can become highly successful even there. As climate warms further, these last climatic barriers will also lower, tilting the balance even more in their favour. It is thus extremely urgent to identify current – and future – potential non-natives on the sub-Antarctic islands across the region, and see if sufficient regulations are in place to contain them.

Reference:

Bazzichetto et al. (2021). Once upon a time in the far south: Influence of local drivers and functional traits on plant invasion in the harsh sub-Antarctic islands. Journal of Vegetation Science. https://doi.org/10.1111/jvs.13057

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How heat makes our cities sweat at night

Beautiful data visualization in newspaper De Standaard today, who show-case the newest conclusions from our citizen science project. Here, I provide a shortened English summary of the longread, but for the full beauty of the visuals, you MUST check out the original story here!

Text by Ine Renson, translated largely by http://www.DeepL.com

Where we can cool our gardens with greenery and shade during the day, we are pretty defenseless against urban fever at night. The 5,000 lawn clouds of CuriousNoses in the Garden provide a unique insight into that dynamic.

It took some getting used to after that cool spring, when in mid-June the ventilators had to be brought out after all. Especially for residents of large cities, ‘urban fever’ set in. During the night of June 16 to 17, many were tossing and turning at temperatures that hovered between 20 and 25 degrees around midnight. In the surrounding countryside, it was often much cooler.

We know that the heat island effect, in which cities are significantly warmer than the surrounding area, exposes city dwellers to heat stress at higher rates. But much remains to be discovered about its exact dynamics. With their temperature data recorded every 15 minutes, the 5,000 lawn clouds from CuriousNoses in the Garden provide a unique insight into that process.

To study the heat island effect, we look at the air sensor at 12 centimeters above the ground. The temperature there is similar to the temperature we ourselves feel in our garden. The heat island effect can be observed most clearly at night: buildings, asphalt and concrete absorb heat during the day and give it off again in the evening.

It’s harder to sleep in the city

On that warm night of June 16, it was on average two degrees warmer at midnight in Flemish cities than in the countryside. At the coolest time of the night, the difference was three degrees. That doesn’t seem like much, but then it is the average temperature of all urban gardens versus the average temperature of all rural gardens. If you know that local weather conditions, soil type or relief also leave a strong mark and that our countryside is highly urbanized, those few degrees of difference are very significant, says Jonas Lembrechts, ecologist at the UAntwerpen and scientific supervisor of the project. ‘Despite all the variation, the fingerprint of the heat island effect remains. Compare it to global warming: two degrees doesn’t seem like much, but behind that average there are huge differences.’

Comparison between temperatuur (at 12 cm height) in the city and the countryside during a warm, clear night (16-17 june).

The Flemish average masks large local differences between cities and their surrounding countryside. In Antwerp, at midnight, you had peaks of up to 23 degrees and more in the center, while in the surrounding countryside it often stayed below 17 degrees. Across Flanders, the contrast is even greater: between the warmest and coolest gardens, there was a difference of over 15 degrees at midnight.

That makes a huge difference when you’re sleeping, says Lembrechts. Up to 18 degrees you sleep comfortably, but above that temperature it becomes more difficult for many people. The warmer it is outside, the more difficult it is to get rid of the heat that’s hanging in the house. In the countryside it usually cools off at night, so you can ventilate. In the city, this is then no longer possible. The only thing left is energy-hungry air conditioners. That drives up your electricity bill and, on top of that, those air conditioners heat up the outside air even more.’

The 5,000 lawn clouds beautifully illustrate that rhythm through the night. Consider this animation of the night of June 7-8: at 8 p.m. it is still about the same temperature everywhere (orange and red dots). But as the evening and the night progress, you can see big differences. While it gradually cools down in the countryside (blue to dark blue), the heat lingers in several cities (orange and light blue dots).

This spring the temperatures were not extreme yet in the region. But this pattern clearly shows what we can expect during the next heat wave. As climate change makes our summers hotter, the health risks associated with heat stress will also increase.

There is no such thing as ‘the’ heat island effect

An interesting observation: there is no such thing as “the” heat island effect. Every city has its own dynamics. The larger and more densely built up, the greater the heat island effect. As the largest city, Antwerp stands out. But even in Ghent, Mechelen or Leuven the heat lingers until the early morning.

Cities like Genk or Kortrijk stand out less on the maps. ‘A lot depends on how compact a city is built,’ says Lembrechts. ‘Genk, for example, has a less densely built-up city center, but rather a wide-spread development. More compact cities have urban planning advantages, but must consider adequate cooling in their urban planning.’

Regional differences also stand out. For example, in the Kempen region and in Limburg there are often temperature peaks on hot days. The sandy soil heats up faster and there is no cooling sea breeze that brings relief. But during the night the Kempen and Limburg gardens cool down well. ‘Sandy soil heats up more strongly in the sun, but also quickly loses its heat again,’ Lembrechts explains. ‘So the difference between day and night is usually greater in the Kempen than at the coast.’

The heat island effect is also a dynamic phenomenon that can be experienced differently every night. ‘The effect is most pronounced during clear nights, warm or cold,’ says Lembrechts. But on cloudy or rainy nights, there is little sign of it. That’s when classic weather patterns take over, such as a rainstorm washing away the heat or a cold front moving across the country. That rain is often not distributed evenly across the region, so other patterns appear on the dot map.

The June RMI data show that it rained a lot less than average in the Kortrijk region, which meant that it was locally warmer at night than in other regions. These regional differences can influence the size of the heat island effect in each city from day to day.

An extreme example of the impact of weather phenomena can be seen on the night of June 20-21, when a heat storm rolled over Flanders, coming in from France. You can see clearly how a blue wave rolled from west to east, washing away all the heat.

A difference between day and night

But it gets really interesting when we compare day and night. Because during the day the heat island effect plays much less. The Curious Noses data already showed that in urban gardens you can cool down just as well in the shade of buildings and trees. How you design your garden has a big impact on how it feels during the day, but also on the warming of the soil, and thus how plants and soil life thrive in your garden.

This was evident when we looked at maximum temperatures in the garden soil. Contrary to expectations, there was no heat island effect on that dot map: urban garden soils are not necessarily warmer during the day than those in the countryside.

But on the urban fever at night and how we experience it when we sleep, we have less impact. The heat spreads through the city at night and lingers between the buildings like a warm blanket,’ says Jonas Lembrechts.

Whereas the soil temperature shows a diffuse picture during the day, you can see clear patterns in the map of the air temperature at night.

It is the first time that this fascinating difference has been mapped so accurately with a sensor network.

So are we defenseless against urban fever at night? ‘Not quite,’ says Lembrechts. ‘We still see big differences between gardens that are close to each other. You do have an influence as a gardener. This may have to do with the amount of greenery or paving in your garden, and how much heat your garden gives off in the evening. We want to analyze that further. In a garden with ten trees, you might have a cooler head start.’

And what if the neighbors also have ten trees? And the rest of the neighborhood too? Then together you have a small forest. That is the interesting question’, says Lembrechts: ‘We see our gardens as isolated places, but from a climate perspective they can form one big park. If we work together, perhaps we can provide a lever against the nocturnal heat island effect.’

This is then a matter of collective responsibility of neighbors, but also of urban planning and landscaping in which parks and natural areas close to the city can play a key role. ‘We’re going to use this beautiful dataset we are amassing to find out how big that collective effort has to be to have an effect,’ says Lembrechts.

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